PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 374aa    MW: 40407.1 Da    PI: 6.8461
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.92.4e-34202259259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  Kaladp0010s0001.1.p 202 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGQHNHP 259
                          8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-36186261IPR003657WRKY domain
SuperFamilySSF1182906.15E-30193261IPR003657WRKY domain
PROSITE profilePS5081132.833196261IPR003657WRKY domain
SMARTSM007741.8E-40201260IPR003657WRKY domain
PfamPF031061.0E-26202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSDHQPTDFF NFHDPFVTYQ YSNLLGQAGA TTAPTSAASS SLYDNSSYNS GITTGMSFSE  60
SLDGSVDYNT LARAFGLSSS SSEELFSSVV NEGLGYGKAQ GDQMLQGDGN NGQIGAIGGS  120
SGGGEVVLAS PGPNSSISSS SGEASGREED CSKEHKVAKG SHEDEDGDSS KKQSKQSNKK  180
GEKRQREPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCNVKKRVER  240
SFQDPSIVIT TYEGQHNHPI PTTLRGSYNT PSLMFSPPSS LSPAAFNLAG GAQGSGFINP  300
HDLLLRMPHW HNNNLIHGMG YNNGGIPPSS TPTSLHQRLQ QRSQQPQVQA DYGLLQDLVN  360
PSGSFGDHKQ EQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-29192261877Probable WRKY transcription factor 4
2lex_A5e-29192261877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360850.14e-83PREDICTED: probable WRKY transcription factor 71
RefseqXP_009353824.14e-83PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ21e-58WRK28_ARATH; Probable WRKY transcription factor 28
TrEMBLA0A0D2S1Y13e-76A0A0D2S1Y1_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.17e-53WRKY DNA-binding protein 28